Please use this identifier to cite or link to this item: http://elar.urfu.ru/handle/10995/90782
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dc.contributor.authorDi, Achille, P.en
dc.contributor.authorParikh, J.en
dc.contributor.authorKhamzin, S.en
dc.contributor.authorSolovyova, O.en
dc.contributor.authorKozloski, J.en
dc.contributor.authorGurev, V.en
dc.date.accessioned2020-09-29T09:48:46Z-
dc.date.available2020-09-29T09:48:46Z-
dc.date.issued2020-
dc.identifier.citationModel order reduction for left ventricular mechanics via congruency training / P. Di Achille, J. Parikh, S. Khamzin, O. Solovyova, et al. . — DOI 10.1371/journal.pone.0219876 // PLoS ONE. — 2020. — Vol. 1. — Iss. 15. — e0219876.en
dc.identifier.issn1932-6203-
dc.identifier.otherhttps://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0219876&type=printablepdf
dc.identifier.other1good_DOI
dc.identifier.other357b78f0-ded6-4a72-ae5d-b3c08f18a0e8pure_uuid
dc.identifier.otherhttp://www.scopus.com/inward/record.url?partnerID=8YFLogxK&scp=85077608165m
dc.identifier.urihttp://elar.urfu.ru/handle/10995/90782-
dc.description.abstractComputational models of the cardiovascular system and specifically heart function are currently being investigated as analytic tools to assist medical practice and clinical trials. To achieve clinical utility, models should be able to assimilate the diagnostic multi-modality data available for each patient and generate consistent representations of the underlying cardiovascular physiology. While finite element models of the heart can naturally account for patient-specific anatomies reconstructed from medical images, optimizing the many other parameters driving simulated cardiac functions is challenging due to computational complexity. With the goal of streamlining parameter adaptation, in this paper we present a novel, multifidelity strategy for model order reduction of 3-D finite element models of ventricular mechanics. Our approach is centered around well established findings on the similarity between contraction of an isolated muscle and the whole ventricle. Specifically, we demonstrate that simple linear transformations between sarcomere strain (tension) and ventricular volume (pressure) are sufficient to reproduce global pressure-volume outputs of 3-D finite element models even by a reduced model with just a single myocyte unit. We further develop a procedure for congruency training of a surrogate low-order model from multiscale finite elements, and we construct an example of parameter optimization based on medical images. We discuss how the presented approach might be employed to process large datasets of medical images as well as databases of echocardiographic reports, paving the way towards application of heart mechanics models in the clinical practice. © 2020 Di Achille et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.en
dc.description.sponsorship19-14- 00134en
dc.description.sponsorshipRussell Sage Foundation, RSFen
dc.description.sponsorshipSK and OS were funded by RSF (http:// www.rscf.ru/en/) as described below. Part of this work was carried out within the framework of the IIF UrB RAS government assignment and was partially supported by the UrFU Competitiveness Enhancement Program (agreement 02. A03.21.0006) as well as the RSF grant (No. 19-14- 00134). The Uran supercomputer at IMM UrB RAS was used for part of the model calculations. IBM provided support in the form of salaries for authors PA, JP, JK and VG but did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript. The specific roles of these authors are articulated in the "author contributions" section.en
dc.format.mimetypeapplication/pdfen
dc.language.isoenen
dc.publisherPublic Library of Scienceen
dc.relationinfo:eu-repo/grantAgreement/RSF//19-14-00134en
dc.rightsinfo:eu-repo/semantics/openAccessen
dc.rightscc-byother
dc.sourcePLoS ONEen
dc.subjectARTICLEen
dc.subjectCLINICAL PRACTICEen
dc.subjectHEART LEFT VENTRICLEen
dc.subjectHUMANen
dc.subjectHUMAN CELLen
dc.subjectMECHANICSen
dc.subjectMUSCLE FIBER CULTUREen
dc.subjectSARCOMEREen
dc.subjectTENSIONen
dc.subjectTHREE DIMENSIONAL FINITE ELEMENT ANALYSISen
dc.subjectAGEDen
dc.subjectBIOLOGICAL MODELen
dc.subjectBIOMECHANICSen
dc.subjectCASE REPORTen
dc.subjectCOMPUTER SIMULATIONen
dc.subjectDIAGNOSTIC IMAGINGen
dc.subjectECHOCARDIOGRAPHYen
dc.subjectFEMALEen
dc.subjectFINITE ELEMENT ANALYSISen
dc.subjectHEART CONTRACTIONen
dc.subjectHEART FAILUREen
dc.subjectHEART LEFT VENTRICLE FUNCTIONen
dc.subjectHEART VENTRICLEen
dc.subjectMALEen
dc.subjectPATHOPHYSIOLOGYen
dc.subjectPHYSIOLOGYen
dc.subjectAGEDen
dc.subjectBIOMECHANICAL PHENOMENAen
dc.subjectCOMPUTER SIMULATIONen
dc.subjectECHOCARDIOGRAPHYen
dc.subjectFEMALEen
dc.subjectFINITE ELEMENT ANALYSISen
dc.subjectHEART FAILUREen
dc.subjectHEART VENTRICLESen
dc.subjectHUMANSen
dc.subjectMALEen
dc.subjectMODELS, CARDIOVASCULARen
dc.subjectMYOCARDIAL CONTRACTIONen
dc.subjectSARCOMERESen
dc.subjectVENTRICULAR FUNCTION, LEFTen
dc.titleModel order reduction for left ventricular mechanics via congruency trainingen
dc.typeArticleen
dc.typeinfo:eu-repo/semantics/articleen
dc.typeinfo:eu-repo/semantics/publishedVersionen
dc.identifier.doi10.1371/journal.pone.0219876-
dc.identifier.scopus85077608165-
local.affiliationHealthcare and Life Sciences Research, IBM T.J. Watson Research Center, Yorktown Heights, NY, United Statesen
local.affiliationUral Federal University, Yekaterinburg, Russian Federationen
local.affiliationInstitute of Immunology and Physiology, Ural Branch of the Russian Academy of Sciences (UB RAS), Yekaterinburg, Russian Federationen
local.contributor.employeeDi Achille, P., Healthcare and Life Sciences Research, IBM T.J. Watson Research Center, Yorktown Heights, NY, United Statesru
local.contributor.employeeParikh, J., Healthcare and Life Sciences Research, IBM T.J. Watson Research Center, Yorktown Heights, NY, United Statesru
local.contributor.employeeKhamzin, S., Ural Federal University, Yekaterinburg, Russian Federation, Institute of Immunology and Physiology, Ural Branch of the Russian Academy of Sciences (UB RAS), Yekaterinburg, Russian Federationru
local.contributor.employeeSolovyova, O., Ural Federal University, Yekaterinburg, Russian Federation, Institute of Immunology and Physiology, Ural Branch of the Russian Academy of Sciences (UB RAS), Yekaterinburg, Russian Federationru
local.contributor.employeeKozloski, J., Healthcare and Life Sciences Research, IBM T.J. Watson Research Center, Yorktown Heights, NY, United Statesru
local.contributor.employeeGurev, V., Healthcare and Life Sciences Research, IBM T.J. Watson Research Center, Yorktown Heights, NY, United Statesru
local.issue15-
local.volume1-
dc.identifier.wos000534327700001-
local.identifier.pure11899495-
local.description.ordere0219876-
local.identifier.eid2-s2.0-85077608165-
local.fund.rsf19-14-00134-
local.identifier.wosWOS:000534327700001-
Appears in Collections:Научные публикации ученых УрФУ, проиндексированные в SCOPUS и WoS CC

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