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DC Field | Value | Language |
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dc.contributor.author | Di, Achille, P. | en |
dc.contributor.author | Parikh, J. | en |
dc.contributor.author | Khamzin, S. | en |
dc.contributor.author | Solovyova, O. | en |
dc.contributor.author | Kozloski, J. | en |
dc.contributor.author | Gurev, V. | en |
dc.date.accessioned | 2020-09-29T09:48:46Z | - |
dc.date.available | 2020-09-29T09:48:46Z | - |
dc.date.issued | 2020 | - |
dc.identifier.citation | Model order reduction for left ventricular mechanics via congruency training / P. Di Achille, J. Parikh, S. Khamzin, O. Solovyova, et al. . — DOI 10.1371/journal.pone.0219876 // PLoS ONE. — 2020. — Vol. 1. — Iss. 15. — e0219876. | en |
dc.identifier.issn | 1932-6203 | - |
dc.identifier.other | https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0219876&type=printable | |
dc.identifier.other | 1 | good_DOI |
dc.identifier.other | 357b78f0-ded6-4a72-ae5d-b3c08f18a0e8 | pure_uuid |
dc.identifier.other | http://www.scopus.com/inward/record.url?partnerID=8YFLogxK&scp=85077608165 | m |
dc.identifier.uri | http://elar.urfu.ru/handle/10995/90782 | - |
dc.description.abstract | Computational models of the cardiovascular system and specifically heart function are currently being investigated as analytic tools to assist medical practice and clinical trials. To achieve clinical utility, models should be able to assimilate the diagnostic multi-modality data available for each patient and generate consistent representations of the underlying cardiovascular physiology. While finite element models of the heart can naturally account for patient-specific anatomies reconstructed from medical images, optimizing the many other parameters driving simulated cardiac functions is challenging due to computational complexity. With the goal of streamlining parameter adaptation, in this paper we present a novel, multifidelity strategy for model order reduction of 3-D finite element models of ventricular mechanics. Our approach is centered around well established findings on the similarity between contraction of an isolated muscle and the whole ventricle. Specifically, we demonstrate that simple linear transformations between sarcomere strain (tension) and ventricular volume (pressure) are sufficient to reproduce global pressure-volume outputs of 3-D finite element models even by a reduced model with just a single myocyte unit. We further develop a procedure for congruency training of a surrogate low-order model from multiscale finite elements, and we construct an example of parameter optimization based on medical images. We discuss how the presented approach might be employed to process large datasets of medical images as well as databases of echocardiographic reports, paving the way towards application of heart mechanics models in the clinical practice. © 2020 Di Achille et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. | en |
dc.description.sponsorship | 19-14- 00134 | en |
dc.description.sponsorship | Russell Sage Foundation, RSF | en |
dc.description.sponsorship | SK and OS were funded by RSF (http:// www.rscf.ru/en/) as described below. Part of this work was carried out within the framework of the IIF UrB RAS government assignment and was partially supported by the UrFU Competitiveness Enhancement Program (agreement 02. A03.21.0006) as well as the RSF grant (No. 19-14- 00134). The Uran supercomputer at IMM UrB RAS was used for part of the model calculations. IBM provided support in the form of salaries for authors PA, JP, JK and VG but did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript. The specific roles of these authors are articulated in the "author contributions" section. | en |
dc.format.mimetype | application/pdf | en |
dc.language.iso | en | en |
dc.publisher | Public Library of Science | en |
dc.relation | info:eu-repo/grantAgreement/RSF//19-14-00134 | en |
dc.rights | info:eu-repo/semantics/openAccess | en |
dc.rights | cc-by | other |
dc.source | PLoS ONE | en |
dc.subject | ARTICLE | en |
dc.subject | CLINICAL PRACTICE | en |
dc.subject | HEART LEFT VENTRICLE | en |
dc.subject | HUMAN | en |
dc.subject | HUMAN CELL | en |
dc.subject | MECHANICS | en |
dc.subject | MUSCLE FIBER CULTURE | en |
dc.subject | SARCOMERE | en |
dc.subject | TENSION | en |
dc.subject | THREE DIMENSIONAL FINITE ELEMENT ANALYSIS | en |
dc.subject | AGED | en |
dc.subject | BIOLOGICAL MODEL | en |
dc.subject | BIOMECHANICS | en |
dc.subject | CASE REPORT | en |
dc.subject | COMPUTER SIMULATION | en |
dc.subject | DIAGNOSTIC IMAGING | en |
dc.subject | ECHOCARDIOGRAPHY | en |
dc.subject | FEMALE | en |
dc.subject | FINITE ELEMENT ANALYSIS | en |
dc.subject | HEART CONTRACTION | en |
dc.subject | HEART FAILURE | en |
dc.subject | HEART LEFT VENTRICLE FUNCTION | en |
dc.subject | HEART VENTRICLE | en |
dc.subject | MALE | en |
dc.subject | PATHOPHYSIOLOGY | en |
dc.subject | PHYSIOLOGY | en |
dc.subject | AGED | en |
dc.subject | BIOMECHANICAL PHENOMENA | en |
dc.subject | COMPUTER SIMULATION | en |
dc.subject | ECHOCARDIOGRAPHY | en |
dc.subject | FEMALE | en |
dc.subject | FINITE ELEMENT ANALYSIS | en |
dc.subject | HEART FAILURE | en |
dc.subject | HEART VENTRICLES | en |
dc.subject | HUMANS | en |
dc.subject | MALE | en |
dc.subject | MODELS, CARDIOVASCULAR | en |
dc.subject | MYOCARDIAL CONTRACTION | en |
dc.subject | SARCOMERES | en |
dc.subject | VENTRICULAR FUNCTION, LEFT | en |
dc.title | Model order reduction for left ventricular mechanics via congruency training | en |
dc.type | Article | en |
dc.type | info:eu-repo/semantics/article | en |
dc.type | info:eu-repo/semantics/publishedVersion | en |
dc.identifier.doi | 10.1371/journal.pone.0219876 | - |
dc.identifier.scopus | 85077608165 | - |
local.affiliation | Healthcare and Life Sciences Research, IBM T.J. Watson Research Center, Yorktown Heights, NY, United States | en |
local.affiliation | Ural Federal University, Yekaterinburg, Russian Federation | en |
local.affiliation | Institute of Immunology and Physiology, Ural Branch of the Russian Academy of Sciences (UB RAS), Yekaterinburg, Russian Federation | en |
local.contributor.employee | Di Achille, P., Healthcare and Life Sciences Research, IBM T.J. Watson Research Center, Yorktown Heights, NY, United States | ru |
local.contributor.employee | Parikh, J., Healthcare and Life Sciences Research, IBM T.J. Watson Research Center, Yorktown Heights, NY, United States | ru |
local.contributor.employee | Khamzin, S., Ural Federal University, Yekaterinburg, Russian Federation, Institute of Immunology and Physiology, Ural Branch of the Russian Academy of Sciences (UB RAS), Yekaterinburg, Russian Federation | ru |
local.contributor.employee | Solovyova, O., Ural Federal University, Yekaterinburg, Russian Federation, Institute of Immunology and Physiology, Ural Branch of the Russian Academy of Sciences (UB RAS), Yekaterinburg, Russian Federation | ru |
local.contributor.employee | Kozloski, J., Healthcare and Life Sciences Research, IBM T.J. Watson Research Center, Yorktown Heights, NY, United States | ru |
local.contributor.employee | Gurev, V., Healthcare and Life Sciences Research, IBM T.J. Watson Research Center, Yorktown Heights, NY, United States | ru |
local.issue | 15 | - |
local.volume | 1 | - |
dc.identifier.wos | 000534327700001 | - |
local.identifier.pure | 11899495 | - |
local.description.order | e0219876 | - |
local.identifier.eid | 2-s2.0-85077608165 | - |
local.fund.rsf | 19-14-00134 | - |
local.identifier.wos | WOS:000534327700001 | - |
Appears in Collections: | Научные публикации ученых УрФУ, проиндексированные в SCOPUS и WoS CC |
Files in This Item:
File | Description | Size | Format | |
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10.1371-journal.pone.0219876.pdf | 1,92 MB | Adobe PDF | View/Open |
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