Please use this identifier to cite or link to this item: http://hdl.handle.net/10995/51103
Title: Tick-borne encephalitis virus: Reference strain Sofjin and problem of its authenticity
Authors: Kovalev, S. Y.
Mukhacheva, T. A.
Kokorev, V. S.
Belyaeva, I. V.
Issue Date: 2012
Citation: Tick-borne encephalitis virus: Reference strain Sofjin and problem of its authenticity / S. Y. Kovalev, T. A. Mukhacheva, V. S. Kokorev, I. V. Belyaeva // Virus Genes. — 2012. — Vol. 44. — № 2. — P. 217-224.
Abstract: The Sofjin strain is one of the first isolates of tick-borne encephalitis virus and, due to its wide distribution in virus collections, it has become the reference strain. Until now, GenBank has recorded several sequences associated with the Sofjin strain that have significant differences between each other. We have sequenced the complete genome of the Sofjin strain from a virus collection and a genome fragment of the two vaccine Sofjin strains. According to phylogenetic analysis, we concluded that the GenBank sequences belong to three independent groups of Sofjin strains of the Far Eastern subtype. Their genetic differences are not a result of microevolution associated with numerous passages. Retrospective analysis of the peculiarities of origin and distribution for each of these groups showed the authenticity of one of them. For the first time, we have determined a complete genome sequence of the authentic reference TBEV strain Sofjin. Two other groups of strains named Sofjin were probably the result of cross-contamination or laboratory error. The high probability of contamination requires the introduction of a new standard for virological laboratories, the key point of which is the obligatory genetic identification of all collection strains. © Springer Science+Business Media, LLC 2011.
Keywords: AUTHENTICITY
COLLECTION STRAIN
LABORATORY ERROR
RETROSPECTIVE ANALYSIS
TICK-BORNE ENCEPHALITIS VIRUS
URI: http://hdl.handle.net/10995/51103
https://elar.urfu.ru/handle/10995/51103
Access: info:eu-repo/semantics/restrictedAccess
SCOPUS ID: 84862629728
WOS ID: 000300905100008
PURE ID: 1085842
ISSN: 0920-8569
DOI: 10.1007/s11262-011-0690-9
Appears in Collections:Научные публикации, проиндексированные в SCOPUS и WoS CC

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