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dc.contributor.authorLiu, S.en
dc.contributor.authorWestbury, M. V.en
dc.contributor.authorDussex, N.en
dc.contributor.authorMitchell, K. J.en
dc.contributor.authorSinding, M. -H. S.en
dc.contributor.authorHeintzman, P. D.en
dc.contributor.authorDuchêne, D. A.en
dc.contributor.authorKapp, J. D.en
dc.contributor.authorvon Seth, J.en
dc.contributor.authorHeiniger, H.en
dc.contributor.authorSánchez-Barreiro, F.en
dc.contributor.authorMargaryan, A.en
dc.contributor.authorAndré-Olsen, R.en
dc.contributor.authorDe Cahsan, B.en
dc.contributor.authorMeng, G.en
dc.contributor.authorYang, C.en
dc.contributor.authorChen, L.en
dc.contributor.authorvan der Valk, T.en
dc.contributor.authorMoodley, Y.en
dc.contributor.authorRookmaaker, K.en
dc.contributor.authorBruford, M. W.en
dc.contributor.authorRyder, O.en
dc.contributor.authorSteiner, C.en
dc.contributor.authorBruins-van Sonsbeek, L. G. R.en
dc.contributor.authorVartanyan, S.en
dc.contributor.authorGuo, C.en
dc.contributor.authorCooper, A.en
dc.contributor.authorKosintsev, P.en
dc.contributor.authorKirillova, I.en
dc.contributor.authorLister, A. M.en
dc.contributor.authorMarques-Bonet, T.en
dc.contributor.authorGopalakrishnan, S.en
dc.contributor.authorDunn, R. R.en
dc.contributor.authorLorenzen, E. D.en
dc.contributor.authorShapiro, B.en
dc.contributor.authorZhang, G.en
dc.contributor.authorAntoine, P. -O.en
dc.contributor.authorDalén, L.en
dc.contributor.authorGilbert, M. T. P.en
dc.date.accessioned2022-05-12T08:21:32Z-
dc.date.available2022-05-12T08:21:32Z-
dc.date.issued2021-
dc.identifier.citationAncient and Modern Genomes Unravel the Evolutionary History of the Rhinoceros Family / S. Liu, M. V. Westbury, N. Dussex et al. // Cell. — 2021. — Vol. 184. — Iss. 19. — P. 4874-4885.e16.en
dc.identifier.issn0092-8674-
dc.identifier.otherAll Open Access, Hybrid Gold, Green3
dc.identifier.urihttp://elar.urfu.ru/handle/10995/111730-
dc.description.abstractOnly five species of the once-diverse Rhinocerotidae remain, making the reconstruction of their evolutionary history a challenge to biologists since Darwin. We sequenced genomes from five rhinoceros species (three extinct and two living), which we compared to existing data from the remaining three living species and a range of outgroups. We identify an early divergence between extant African and Eurasian lineages, resolving a key debate regarding the phylogeny of extant rhinoceroses. This early Miocene (∼16 million years ago [mya]) split post-dates the land bridge formation between the Afro-Arabian and Eurasian landmasses. Our analyses also show that while rhinoceros genomes in general exhibit low levels of genome-wide diversity, heterozygosity is lowest and inbreeding is highest in the modern species. These results suggest that while low genetic diversity is a long-term feature of the family, it has been particularly exacerbated recently, likely reflecting recent anthropogenic-driven population declines. © 2021 The Authors.en
dc.description.sponsorshipThe authors acknowledge support from the Science for Life Laboratory, the Garvan Institute of Medical Research, the Knut and Alice Wallenberg Foundation, and the National Genomics Infrastructure funded by the Swedish Research Council and Uppsala Multidisciplinary Center for Advanced Computational Science for assistance with massively parallel sequencing and access to the UPPMAX computational infrastructure. We thank the Natural History Museum at the University of Oslo for providing the Javan rhinoceros sample. We thank the Museum of the Institute of Plant and Animal Ecology (UB RAS, Ekaterinburg) for providing the sample of Siberian unicorn. M.T.P.G. was supported by European Research Council (ERC) Consolidator grant 681396 (Extinction Genomics). E.D.L. was supported by Independent Research Fund Denmark grant 8021-00218B . A.C. was supported by an Australian Research Council Laureate Fellowship ( FL140100260 ). T.M.B. is supported by funding from the ERC under the European Union’s Horizon 2020 research and innovation program (grant agreement 864203 ), grant BFU2017-86471-P ( MINECO /FEDER, UE), “Unidad de Excelencia María de Maeztu” funded by the AEI ( CEX2018-000792-M ), Howard Hughes International Early Career, and Secretaria d’Universitats i Recerca and CERCA Programme del Departament d’Economia i Coneixement de la Generalitat de Catalunya ( GRC 2017 SGR 880 ). L.D. was supported by the Swedish Research Council ( 2017-04647 ) and Formas ( 2018-01640 ). We thank Dmitry Bogdanov and Roger Hall for giving us permission to use their rhinoceros artwork.en
dc.format.mimetypeapplication/pdfen
dc.language.isoenen
dc.publisherElsevier B.V.en1
dc.publisherElsevier BVen
dc.rightsinfo:eu-repo/semantics/openAccessen
dc.sourceCell2
dc.sourceCellen
dc.subjectRHINOCEROS, PERISSODACTYL, CONSERVATION GENOMICS, PHYLOGENOMICS, GENOMIC DIVERSITYen
dc.subjectAFRICAen
dc.subjectARTICLEen
dc.subjectASIAen
dc.subjectEUROPEen
dc.subjectEVOLUTIONen
dc.subjectEXTANT SPECIESen
dc.subjectEXTINCT SPECIESen
dc.subjectGENE FLOWen
dc.subjectGENETIC ANALYSISen
dc.subjectGENETIC VARIABILITYen
dc.subjectHETEROZYGOSITYen
dc.subjectINBREEDINGen
dc.subjectMIOCENEen
dc.subjectNONHUMANen
dc.subjectPHYLOGENYen
dc.subjectRHINOCEROSen
dc.subjectSEQUENCE ANALYSISen
dc.subjectSPECIES DIFFERENCEen
dc.subjectUNGULATEen
dc.subjectANIMALen
dc.subjectDEMOGRAPHYen
dc.subjectGENETIC VARIATIONen
dc.subjectGENETICSen
dc.subjectGENOMEen
dc.subjectGEOGRAPHYen
dc.subjectHETEROZYGOTEen
dc.subjectHOMOZYGOTEen
dc.subjectHOST RANGEen
dc.subjectMARKOV CHAINen
dc.subjectMOLECULAR EVOLUTIONen
dc.subjectMUTATIONen
dc.subjectPERISSODACTYLAen
dc.subjectTIME FACTORen
dc.subjectANIMALSen
dc.subjectDEMOGRAPHYen
dc.subjectEVOLUTION, MOLECULARen
dc.subjectGENE FLOWen
dc.subjectGENETIC VARIATIONen
dc.subjectGENOMEen
dc.subjectGEOGRAPHYen
dc.subjectHETEROZYGOTEen
dc.subjectHOMOZYGOTEen
dc.subjectHOST SPECIFICITYen
dc.subjectMARKOV CHAINSen
dc.subjectMUTATIONen
dc.subjectPERISSODACTYLAen
dc.subjectPHYLOGENYen
dc.subjectSPECIES SPECIFICITYen
dc.subjectTIME FACTORSen
dc.titleAncient and Modern Genomes Unravel the Evolutionary History of the Rhinoceros Familyen
dc.typeArticleen
dc.typeinfo:eu-repo/semantics/articleen
dc.typeinfo:eu-repo/semantics/publishedVersionen
dc.identifier.rsi47003781-
dc.identifier.doi10.1016/j.cell.2021.07.032-
dc.identifier.scopus85115014672-
local.contributor.employeeLiu, S., Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, 100193, China, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1353, Denmark; Westbury, M.V., The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1353, Denmark; Dussex, N., Centre for Palaeogenetics, Svante Arrhenius vag 20C, Stockholm, 10691, Sweden, Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, 10405, Sweden, Department of Zoology, Stockholm University, Stockholm, 10691, Sweden; Mitchell, K.J., Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, 5005, Australia; Sinding, M.-H.S., The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1353, Denmark; Heintzman, P.D., The Arctic University Museum of Norway, UiT The Arctic University of Norway, Tromsø, 9037, Norway; Duchêne, D.A., The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1353, Denmark; Kapp, J.D., Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA 95064, United States; von Seth, J., Centre for Palaeogenetics, Svante Arrhenius vag 20C, Stockholm, 10691, Sweden, Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, 10405, Sweden, Department of Zoology, Stockholm University, Stockholm, 10691, Sweden; Heiniger, H., Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, 5005, Australia; Sánchez-Barreiro, F., The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1353, Denmark; Margaryan, A., The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1353, Denmark; André-Olsen, R., Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, 17121, Sweden; De Cahsan, B., The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1353, Denmark; Meng, G., China National Genebank, BGI Shenzhen, Shenzhen, 518083, China; Yang, C., China National Genebank, BGI Shenzhen, Shenzhen, 518083, China; Chen, L., Center for Ecological and Environmental Sciences, Northwestern Polytechnical University, Xi'an, 710072, China; van der Valk, T., Department of Cell and Molecular Biology, Science for Life Laboratory, Uppsala University, National Bioinformatics Infrastructure Sweden, Uppsala, Sweden; Moodley, Y., Department of Zoology, University of Venda, Thohoyandou, 0950, South Africa; Rookmaaker, K., Editor of the Rhino Resource Center, Utrecht, Netherlands; Bruford, M.W., School of Biosciences, Cardiff University, Sir Martin Evans Building, Cardiff, CF10 3AX, United Kingdom, Sustainable Places Research Institute, Cardiff University, Cardiff, CF10 3BA, United Kingdom; Ryder, O., San Diego Zoo Wildlife Alliance, Beckman Center for Conservation Research, San Diego, CA 92027, United States; Steiner, C., San Diego Zoo Wildlife Alliance, Beckman Center for Conservation Research, San Diego, CA 92027, United States; Bruins-van Sonsbeek, L.G.R., Rotterdam Zoo, Rotterdam, Netherlands; Vartanyan, S., N.A. Shilo North-East Interdisciplinary Scientific Research Institute, Russian Academy of Sciences (NEISRI FEB RAS), Far East Branch, Magadan, 685000, Russian Federation; Guo, C., China National Genebank, BGI Shenzhen, Shenzhen, 518083, China; Cooper, A., South Australian Museum, Adelaide, SA 5000, Australia; Kosintsev, P., Institute of Plant and Animal Ecology, Ural Branch of the Russian Academy of Sciences, Yekaterinburg, Russian Federation, Ural Federal University, Yekaterinburg, Russian Federation; Kirillova, I., Institute of Geography, Russian Academy of Sciences, Moscow, 119017, Russian Federation; Lister, A.M., Department of Earth Sciences, Natural History Museum, London, UK, United Kingdom; Marques-Bonet, T., Institute of Evolutionary Biology (UPF-CSIC), Barcelona, Spain, Centre Nacional d'Anàlisi Genòmica, Centre for Genomic Regulation (CNAG-CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain, Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain, Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Barcelona, Spain; Gopalakrishnan, S., The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1353, Denmark; Dunn, R.R., The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1353, Denmark, Department of Applied Ecology, North Carolina State University, Raleigh, NC, United States; Lorenzen, E.D., The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1353, Denmark; Shapiro, B., Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA 95064, United States, Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA 96050, United States; Zhang, G., China National Genebank, BGI Shenzhen, Shenzhen, 518083, China, Villum Center for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223, China, Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, 650223, China; Antoine, P.-O., Institut des Sciences de l’Évolution, Université Montpellier, CNRS, IRD, EPHE, Montpellier, 34095, France; Dalén, L., Centre for Palaeogenetics, Svante Arrhenius vag 20C, Stockholm, 10691, Sweden, Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, 10405, Sweden, Department of Zoology, Stockholm University, Stockholm, 10691, Sweden; Gilbert, M.T.P., The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1353, Denmark, Norwegian University of Science and Technology (NTNU) University Museum, Trondheim, 7012, Norwayen
local.description.firstpage4874-
local.description.lastpage4885.e16-
local.issue19-
local.volume184-
dc.identifier.wos000704445100006-
local.contributor.departmentDepartment of Entomology, College of Plant Protection, China Agricultural University, Beijing, 100193, China; The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 1353, Denmark; Centre for Palaeogenetics, Svante Arrhenius vag 20C, Stockholm, 10691, Sweden; Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, 10405, Sweden; Department of Zoology, Stockholm University, Stockholm, 10691, Sweden; Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, 5005, Australia; The Arctic University Museum of Norway, UiT The Arctic University of Norway, Tromsø, 9037, Norway; Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA 95064, United States; Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, 17121, Sweden; China National Genebank, BGI Shenzhen, Shenzhen, 518083, China; Center for Ecological and Environmental Sciences, Northwestern Polytechnical University, Xi'an, 710072, China; Department of Cell and Molecular Biology, Science for Life Laboratory, Uppsala University, National Bioinformatics Infrastructure Sweden, Uppsala, Sweden; Department of Zoology, University of Venda, Thohoyandou, 0950, South Africa; Editor of the Rhino Resource Center, Utrecht, Netherlands; School of Biosciences, Cardiff University, Sir Martin Evans Building, Cardiff, CF10 3AX, United Kingdom; Sustainable Places Research Institute, Cardiff University, Cardiff, CF10 3BA, United Kingdom; San Diego Zoo Wildlife Alliance, Beckman Center for Conservation Research, San Diego, CA 92027, United States; Rotterdam Zoo, Rotterdam, Netherlands; N.A. Shilo North-East Interdisciplinary Scientific Research Institute, Russian Academy of Sciences (NEISRI FEB RAS), Far East Branch, Magadan, 685000, Russian Federation; South Australian Museum, Adelaide, SA 5000, Australia; Institute of Plant and Animal Ecology, Ural Branch of the Russian Academy of Sciences, Yekaterinburg, Russian Federation; Ural Federal University, Yekaterinburg, Russian Federation; Institute of Geography, Russian Academy of Sciences, Moscow, 119017, Russian Federation; Department of Earth Sciences, Natural History Museum, London, UK, United Kingdom; Institute of Evolutionary Biology (UPF-CSIC), Barcelona, Spain; Centre Nacional d'Anàlisi Genòmica, Centre for Genomic Regulation (CNAG-CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Barcelona, Spain; Department of Applied Ecology, North Carolina State University, Raleigh, NC, United States; Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA 96050, United States; Villum Center for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223, China; Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, 650223, China; Institut des Sciences de l’Évolution, Université Montpellier, CNRS, IRD, EPHE, Montpellier, 34095, France; Norwegian University of Science and Technology (NTNU) University Museum, Trondheim, 7012, Norwayen
local.identifier.pure23723315-
local.identifier.eid2-s2.0-85115014672-
local.fund.cordisH2020: 864203-
local.identifier.wosWOS:000704445100006-
local.identifier.pmid34433011-
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